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Here is a list of all class members with links to the classes they belong to:
- a -
adduct :
NucleicAcidSearchEngine::PrecursorInfo
ambiguous_mods_ :
NucleicAcidSearchEngine
annotations :
NucleicAcidSearchEngine::AnnotatedHit
- b -
binPeaks_() :
TOPPGNPSExport
- c -
calculateAndFilterFDR_() :
NucleicAcidSearchEngine
calculatePrecursorMass_() :
NucleicAcidSearchEngine
charge :
NucleicAcidSearchEngine::PrecursorInfo
ConstRibonucleotidePtr :
NucleicAcidSearchEngine
- d -
DEF_COSINE_SIMILARITY :
TOPPGNPSExport
DEF_MERGE_BIN_SIZE :
TOPPGNPSExport
DEF_MSMAP_CACHE :
TOPPGNPSExport
DEF_PEPT_CUTOFF :
TOPPGNPSExport
DEF_PREC_MASS_TOL :
TOPPGNPSExport
DEF_PREC_MASS_TOL_ISPPM :
TOPPGNPSExport
deisotopeAndSingleChargeMSSpectrum_() :
NucleicAcidSearchEngine
- f -
flattenAndBinSpectra_() :
TOPPGNPSExport
fragment_ion_codes_ :
NucleicAcidSearchEngine
- g -
generateLFQInput_() :
NucleicAcidSearchEngine
getElementPeptideIdentificationsByElementIntensity_() :
TOPPGNPSExport
getModifications_() :
NucleicAcidSearchEngine
- h -
HasInvalidLength() :
NucleicAcidSearchEngine::HasInvalidLength
HitsByScore :
NucleicAcidSearchEngine
- i -
isotope :
NucleicAcidSearchEngine::PrecursorInfo
- m -
main_() :
NucleicAcidSearchEngine
,
TOPPGNPSExport
max_size_ :
NucleicAcidSearchEngine::HasInvalidLength
min_size_ :
NucleicAcidSearchEngine::HasInvalidLength
- n -
NucleicAcidSearchEngine() :
NucleicAcidSearchEngine
- o -
oligo_ref :
NucleicAcidSearchEngine::AnnotatedHit
operator()() :
NucleicAcidSearchEngine::HasInvalidLength
- p -
parseAdduct_() :
NucleicAcidSearchEngine
postProcessHits_() :
NucleicAcidSearchEngine
precursor_error_ppm :
NucleicAcidSearchEngine::AnnotatedHit
precursor_ref :
NucleicAcidSearchEngine::AnnotatedHit
PrecursorInfo() :
NucleicAcidSearchEngine::PrecursorInfo
preprocessSpectra_() :
NucleicAcidSearchEngine
- r -
registerIDMetaData_() :
NucleicAcidSearchEngine
registerOptionsAndFlags_() :
NucleicAcidSearchEngine
,
TOPPGNPSExport
resolve_ambiguous_mods_ :
NucleicAcidSearchEngine
resolveAmbiguousMods_() :
NucleicAcidSearchEngine
- s -
scan_index :
NucleicAcidSearchEngine::PrecursorInfo
sequence :
NucleicAcidSearchEngine::AnnotatedHit
sortElementMapsByIntensity_() :
TOPPGNPSExport
- t -
TOPPGNPSExport() :
TOPPGNPSExport
- w -
writeMSMSBlock_() :
TOPPGNPSExport
writeMSMSBlockHeader_() :
TOPPGNPSExport
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